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- Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S, Shkumatava A, Teboul L, Kent J, Joly JS, Concordet JP.
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR. Genome Biol. 2016 Jul 5 ;17(1):148.

- Benítez-Santana T, Simion M, Orraze G, Médale F, Joly JS. Effect of nutrient availability on progenitor cells in zebrafish (Danio rerio). Dev Neurobiol. 2016 Jun 7. doi : 10.1002/dneu.22406.

- Dambroise E, Monnier L, Ruisheng L, Aguilaniu H, Joly JS, Tricoire H, Rera M. Two phases of aging separated by the Smurf transition as a public path to death. Sci Rep. 2016 Mar 22 ;6:23523. doi : 10.1038/srep23523.

- Brombin A, Joly JS, Jamen F. New tricks for an old dog : ribosome biogenesis contributes to stem cell homeostasis. Curr Opin Genet Dev. 2015 Oct ;34:61-70. doi : 10.1016/j.gde.2015.07.006. PMID : 26343009

- Radev Z, Hermel JM, Elipot Y, Bretaud S, Arnould S, Duchateau P, Ruggiero F, Joly JS, Sohm F.
A TALEN-Exon Skipping Design for a Bethlem Myopathy Model in Zebrafish. PLoS One. 2015 Jul 29 ;10(7):e0133986.

- Bery A, Martynoga B, Guillemot F, Joly JS, Rétaux S.
Characterization of enhancers active in the mouse embryonic cerebral cortex suggests Sox/Pou cis-regulatory logics and heterogeneity of cortical progenitors. Cereb Cortex. 2014 Nov ;24(11):2822-34.

- Mirabeau O and Joly JS. The evolution of peptidergic signaling systems in bilaterian animals, PNAS, 110:2028-2037.

- Recher G, Jouralet J, Brombin A, Heuzé A, Mugniery E, Hermel JM, Desnoulez S,Savy T, Herbomel P, Bourrat F, Peyriéras N, Jamen F, Joly JS. Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis. Development, 40:4860-4869.


- Razy-Krajka F, Brown ER, Horie T, Callebert J, Sasakura Y, Joly JS, KusakabeTG, Vernier P. Monoaminergic modulation of photoreception in ascidian : evidence for a proto-hypothalamo-retinal territory. BMC Biol. 29:45.


- Gautier A, Sohm F, Joly JS, Le Gac F, Lareyre JJ. The proximal promoter region of the zebrafish gsdf gene is sufficient to mimic the spatio-temporal expression pattern of the endogenous gene in Sertoli and granulosa cells. Biol Reprod, 85(6):1240-1251.

- Brombin A, Grossier JP, Heuzé A, Radev Z, Bourrat F, Joly JS, Jamen F. Genome-wide analysis of the POU genes in medaka, focusing on expression in the optic tectum. Dev Dyn, 240:2354-2363.

- Mongin E, Auer TO, Bourrat F, Gruhl F, Dewar K, Blanchette M, Wittbrodt J, Ettwiller L. Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish.PLoS One,6:e19747.

- Debiais-Thibaud M, Oulion S, Bourrat F, Laurenti P, Casane D, Borday-Birraux V. The homology of odontodes in gnathostomes : insights from Dlx gene expression in the dogfish, Scyliorhinus canicula. BMC Evol Biol, 11:307.


- Tassy O, Dauga D, Daian F, Sobral D, Robin F, Khoueiry P, Salgado D, Fox V,Caillol D, Schiappa R, Laporte B, Rios A, Luxardi G, Kusakabe T, Joly JS, Darras S, Christiaen L, Contensin M, Auger H, Lamy C, Hudson C, Rothbächer U, Gilchrist MJ, Makabe KW, Hotta K, Fujiwara S, Satoh N, Satou Y, Lemaire P. The ANISEED database : digital representation, formalization, and elucidation of a chordate developmental program. Genome Res, 20:1459-1468.

- Alunni A, Hermel JM, Heuzé A, Bourrat F, Jamen F, Joly JS. Evidence for neural stem cells in the medaka optic tectum proliferation zones. Dev Neurobiol, 70:693-713.

- Gibert Y, Bernard L, Debiais-Thibaud M, Bourrat F, Joly JS, Pottin K, Meyer A, Retaux S, Stock DW, Jackman WR, Seritrakul P, Begemann G, Laudet V. Formation of oral and pharyngeal dentition in teleosts depends on differential recruitment of retinoic acid signaling. FASEB J, 24:3298-3309.

- Haeussler M, Jaszczyszyn Y, Christiaen L, Joly JS. A cis-regulatory signature for chordate anterior neuroectodermal genes. PLoS Genet, 15 ;6:e1000912.

- Auger H, Sasakura Y, Joly JS, Jeffery WR. Regeneration of oral siphon pigment organs in the ascidian Ciona intestinalis. Dev Biol. 339:374-389.

- Zawadzka M, Rivers LE, Fancy SP, Zhao C, Tripathi R, Jamen F, Young K, Goncharevich A, Pohl H, Rizzi M, Rowitch DH, Kessaris N, Suter U, Richardson WD, Franklin RJ. CNS-resident glial progenitor/stem cells produce Schwann cells as well as oligodendrocytes during repair of CNS demyelination. Cell Stem Cell, 2010 6:578-590.


- Auger H, Lamy C, Haeussler M, Khoueiry P, Lemaire P, Joly JS. Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5. Dev Biol, 15 ;329:364-73. IF 4,0

- Dahlberg C, Auger H, Dupont S, Sasakura Y, Thorndyke M, Joly JS. Refining the Ciona intestinalis model of central nervous system regeneration. PLoS One, 4:e4458. IF 4,5

- Psachoulia K, Jamen F, Young KM, Richardson WD. Cell cycle dynamics of NG2 cells in the postnatal and agein g brain. Neuron Glia Biol, 2009 5:57-67.

- Psachoulia K, Jamen F, Young KM, Richardson WD. Cell cycle dynamics of NG2 cells in the postnatal and ageing brain. Neuron Glia Biol, 5:57-67.

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